These Healthy Apple Cinnamon Protein Muffins are soft, cozy, and packed with protein! Made with True Nutrition Vanilla Whey Protein Powder, real apples, and warm cinnamon spice, they’re the perfect wholesome snack or breakfast. Gluten-free optional and meal-prep friendly!

If fall had a flavor, this would be it. These Healthy Apple Cinnamon Protein Muffins are fluffy, perfectly spiced, and bursting with fresh apple chunks and crunchy walnuts. They’re the kind of snack that makes your kitchen smell like a cozy autumn morning, without loading up on sugar or refined junk.

Made with True Nutrition Vanilla Whey Protein Powder (don’t forget to use code HEALTHYHELPER to save on your order!), these muffins aren’t just delicious, they’re a smart way to fuel your day with extra protein and whole food goodness. Perfect for breakfast, post-workout, or an afternoon pick-me-up with a cup of coffee.

What Makes These Muffins So Good for You

Whole grains or oat flour for extra fiber and long-lasting energy
Whey protein to keep you full and support lean muscle
Unsweetened applesauce for natural sweetness (and moisture!)
Heart-healthy coconut oil and walnuts for healthy fats
Real apple chunks in every bite for that warm, cinnamon-apple flavor

Ingredients for Healthy Apple Cinnamon Protein Muffins:

1 1/2 cups whole wheat flour or oat flour (to make them gluten-free!)
1/2 cup True Nutrition Vanilla Whey Protein (code HEALTHYHELPER saves $$!)
1 tsp baking powder
1/2 tsp baking soda
1 tsp ground cinnamon
1/4 tsp salt
1/2 cup unsweetened applesauce
1/4 cup coconut oil, melted
2 large eggs
1/2 cup unsweetened almond milk
1 tsp vanilla extract
1 1/2 cups diced apple (about 1 large apple)
1/2 cup chopped walnuts

Instructions for Healthy Apple Cinnamon Protein Muffins:

Preheat your oven to 350°F (175°C) and line a muffin tin with paper liners or lightly grease with cooking spray.
In a large bowl, whisk together the whole wheat flour, protein powder, baking powder, baking soda, cinnamon, and salt.
In a separate bowl, whisk the eggs, unsweetened applesauce, melted coconut oil, almond milk, and vanilla extract until well combined.
Add the wet ingredients to the dry ingredients and mix until just combined. Be careful not to overmix.
Fold in the diced apple and chopped walnuts, distributing them evenly throughout the batter.
Spoon the batter into the prepared muffin tin, filling each cup about 3/4 full. Top with diced apples and extra walnuts if desired!
Bake for 18-22 minutes or until a toothpick inserted into the center of a muffin comes out clean.
Allow the muffins to cool in the tin for 5 minutes, then transfer them to a wire rack to cool completely.

Healthy Apple Cinnamon Protein Muffins

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Author: Healthy Helper
Prep Time: 10 minutes
Cook Time: 22 minutes
Total Time: 32 minutes
Yield: 12 muffins
Diet: Vegetarian

Ingredients

Scale

1 1/2 cups whole wheat flour or oat flour (to make them gluten-free!)
1/2 cup True Nutrition Vanilla Whey Protein (code HEALTHYHELPER saves $$!)
1 tsp baking powder
1/2 tsp baking soda
1 tsp ground cinnamon
1/4 tsp salt
1/2 cup unsweetened applesauce
1/4 cup coconut oil, melted
2 large eggs
1/2 cup unsweetened almond milk
1 tsp vanilla extract
1 1/2 cups diced apple (about 1 large apple)
1/2 cup chopped walnuts

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Instructions

Preheat your oven to 350°F (175°C) and line a muffin tin with paper liners or lightly grease with cooking spray.
In a large bowl, whisk together the whole wheat flour, protein powder, baking powder, baking soda, cinnamon, and salt.
In a separate bowl, whisk the eggs, unsweetened applesauce, melted coconut oil, almond milk, and vanilla extract until well combined.
Add the wet ingredients to the dry ingredients and mix until just combined. Be careful not to overmix.
Fold in the diced apple and chopped walnuts, distributing them evenly throughout the batter.
Spoon the batter into the prepared muffin tin, filling each cup about 3/4 full. Top with diced apples and extra walnuts if desired!
Bake for 18-22 minutes or until a toothpick inserted into the center of a muffin comes out clean.
Allow the muffins to cool in the tin for 5 minutes, then transfer them to a wire rack to cool completely.

Why You’ll Love Them

They’re protein-packed, gluten-free optional, and naturally sweetened, so you can enjoy a bakery-style treat that fits your goals. Think of them as your fall-approved upgrade to classic apple cinnamon muffins, but made for people who care about real ingredients and balanced nutrition.